A membrane evolutionary algorithm for DNA sequence design in DNA computing

Improving Sequence Design for DNA Computing

Towards a General-Purpose Sequence Design System in DNA Computing

Sequence design has turned out to be a crucial factor in successful DNA computing. In this paper, we present a support system for sequence design in DNA computing. Our system can fit various requirements for sequence design. The β-version of this software is available for download.

Evolutionary Computation & DNA Computing

DNA Computing & Modular Algorithm

The project is based on the combination of DNA Nanomachines with DNA Origamis. The main objective is to use DNA hybridization schemes and Origamis nano-platforms to construct hierarchical sequence of Boolean operations with modular structures. Watson Crick selective pairing between nucleotides has been found robust enough to devise a new kind of molecular motors (B. Yurke et al Nature 2000 406,...

DNA Sequence Optimization Using Constrained Multi-Objective Evolutionary Algorithm

Generating a set of the good DNA sequences needs to optimize multiple objectives and to satisfy several constraints. Therefore, it can be regarded as an instance of constrained multi-objective optimization problem. We apply the controlled elitist non-dominating sorting genetic algorithm with constrained tournament selection to this problem. First, multi-objective approach and constrained multi-...